Species: Coptis chinensis
Accession Number
SRA588794
Sample
Sample Location: C. chinensis was collected from an area managed by the Guangxi Botanical Garden of Medicinal Plants in Nanning, China.
Sample Part: roots and leaves
Sequencing
Sequencing platform: Illumina Hiseq 2000
Sequencing data: a total of 282,639,316 clean reads (total length:39,748,135,308 bp; 39.7 Gb) and 312,917,026 clean reads (total length: 43,953,381,053; 44.0 Gb)
Assembly and Annotation
Assembly software: Trinity
Assembly result: 81,823 unigenes, with an N50 length of 1,536 bp and a mean length of 810 bp, and 78,499 unigenes, with an average length of 784 bp and an N50 length of 1,491 bp.
Annotation Method: NR, Swiss-Prot, KOG, KEGG.
Data Url
Reference
Si-Mei H , Yan-Li L , Kun C , et al. Identification and Characterization of Genes Involved in Benzylisoquinoline Alkaloid Biosynthesis in Coptis Species[J]. Frontiers in Plant Science, 2018, 9:731-.
