Species,"Coptis chinensis" "Sample Location","C. chinensis was collected from an area managed by the Guangxi Botanical Garden of Medicinal Plants in Nanning, China." "Sample Part","roots and leaves " "Sequencing platform","Illumina Hiseq 2000" "Sequencing data","a total of 282,639,316 clean reads (total length:39,748,135,308 bp; 39.7 Gb) and 312,917,026 clean reads (total length: 43,953,381,053; 44.0 Gb) " "Assembly software",Trinity "Assembly result","81,823 unigenes, with an N50 length of 1,536 bp and a mean length of 810 bp, and 78,499 unigenes, with an average length of 784 bp and an N50 length of 1,491 bp." "Annotation Method","NR, Swiss-Prot, KOG, KEGG."