Species: Coptis deltoidea
Accession Number
PRJNA556312
Sample
Sample Location: Nine plant materials of four-year-old C. deltoidea with consistent genetic background and growth were collected from the cultivation base in Hongya, Sichuan, China
Sample Part: leaf, petiole, rhizome, root and stolon
Sequencing
Sequencing platform: PacBio RS II, Illumina HiSeq 2500
Sequencing data: 8,882,132 subreads of PacBio long read, 427,847,906 clean reads of illumina short read
Assembly and Annotation
Assembly software: SMRT Link, CD-HIT
Assembly result: 75,438 nonredundant transcript, the length of in the range of 106 bp to 11,325 bp, N50 of 2,517 bp, GC content of 41.28%
Annotation Method: Nr, Swiss-Prot, KEGG, KOG, GO
Data Url
Reference
Zhong F , Huang L , Qi L , et al. Full-length transcriptome analysis of Coptis deltoidea and identification of putative genes involved in benzylisoquinoline alkaloids biosynthesis based on combined sequencing platforms[J]. Plant Molecular Biology, 2020, 102(4-5):477-499.
