Species,"Coptis deltoidea" "Sample Location","Nine plant materials of four-year-old C. deltoidea with consistent genetic background and growth were collected from the cultivation base in Hongya, Sichuan, China" "Sample Part","leaf, petiole, rhizome, root and stolon" "Sequencing platform","PacBio RS II, Illumina HiSeq 2500" "Sequencing data"," 8,882,132 subreads of PacBio long read, 427,847,906 clean reads of illumina short read" "Assembly software","SMRT Link, CD-HIT" "Assembly result","75,438 nonredundant transcript, the length of in the range of 106 bp to 11,325 bp, N50 of 2,517 bp, GC content of 41.28%" "Annotation Method","Nr, Swiss-Prot, KEGG, KOG, GO"