Species,"Zanthoxylum bungeanum" "Sample Location","the Research Centre for Engineering and Technology of Zanthoxylum, State Forestry Administration, Northwest A&F University, Fengxian, Shaanxi Province, China." "Sample Part","shoots , leaves , stems, flowersand fruits " "Sequencing platform","PacBio RSII, Illumina HiSeq" "Sequencing data","PacBio RSII: A total of 282,101 ROIs were generated, and the average length of the ROIs was 2819 bp. Illumina HiSeq: 23,869,770 clean reads" "Assembly software","Proovread software, CD-HIT software, TransDecoder" "Assembly result","A total of 65,711 ORFs were predicted, 52,331 of which were complete CDSs." "Annotation Method","NR, EggNOG, Pfam, Swiss-Prot, GO, KOG, KEGG, COG."