Species: Taxus cuspidata
Accession Number
PRJNA493167
Sample
Sample Location: Institute of Medicinal Plant Development, Beijing, China
Sample Part: roots, stems and leaves
Sequencing
Sequencing platform: PacBio Sequel, Illumina HiSeq 2000
Sequencing data: PacBio Sequel: 5,678,524 subreads with an average length of 2047 bp.
Assembly and Annotation
Assembly software: SMRTlink, CD-HIT-EST, Trinity, SOAP
Assembly result: 103,072 transcripts, 63,872 (Trinity) and53,781 (SOAP) unigenes
Annotation Method: KEGG, Swiss-Prot , Pfam, KOG, Nr, Nt, GO
Data Url
Reference
Kuang X , Sun S , Wei J , et al. Iso-Seq analysis of the Taxus cuspidata transcriptome reveals the complexity of Taxol biosynthesis[J]. BMC Plant Biology, 2019, 19(1).
