Species: Nothapodytes nimmoniana
Accession Number
SRP063489
Sample
Sample Location: at experimental field of CSIR-Indian Institute of Integrative Medicine (Jammu, India, 32˚44′N longitude, 74˚55′E latitude; 305 masl).
Sample Part: leaf, nascent root wood
Sequencing
Sequencing platform: Illumina HiSeq 2500
Sequencing data: 31,172,889 and 31,218,626 raw reads were generated from leaf and root wood, 28,616,828 and 31,005,361 clean reads from leaf and root wood
Assembly and Annotation
Assembly software: Trinity
Assembly result: 188,680 assembled contigs, average contig length was 680 bp, N50 of 1,101 bp ,and 138,183 unique contigs
Annotation Method: Swiss-Prot, GO, NR, PlantTFDB
Data Url
Reference
Rather G A , Sharma A , Pandith S A , et al. De novo transcriptome analyses reveals putative pathway genes involved in biosynthesis and regulation of camptothecin in Nothapodytes nimmoniana (Graham) Mabb.[J]. Plant Molecular Biology, 2017.
