Species: Oroxylum indicum
Accession Number
SUB2988844
Sample
Sample Location: 10–15 years old plant was collected from Panshet, Pune, Maharashtra, India(N18°22'46.5', E73°37'19.9') in August 2014 (wetseason).
Sample Part: root
Sequencing
Sequencing platform: Illumina Nextseq 500
Sequencing data: 24,625,398 raw reads, 3,718,435,098 bp raw data
Assembly and Annotation
Assembly software: Trinity
Assembly result: 121,286 transcripts with N50 value of 1,783 bp with an average contig length of 1,080 bp，and clustering 81,002 transcripts with an average contig length of 1,071 bp and N50 of 1,788 bp
Annotation Method: UniProtKB, GO, KEGG
Reference
Deshmukh A B , Datir S S , Bhonde Y , et al. De novo root transcriptome of a medicinally important rare tree Oroxylum indicum for characterization of the flavonoid biosynthesis pathway[J]. Phytochemistry, 2018, 156:201-213.
Reference url