Species: Dendrobium huoshanense
Accession Number
SRP122499
Sample
Sample Location: the greenhouse of Anhui Tongjisheng Biotechnology Company, Lu’an, China.
Sample Part: roots, stems and leaves
Sequencing
Sequencing platform: Illumina HiSeq 2500
Sequencing data: 736,904,076 raw reads, and 716,634,006 clean reads
Assembly and Annotation
Assembly software: Trinity
Assembly result: 595,635 transcripts, average length of 764.73 bp, N50 of 1,241 bp. 478,361 unigenes, range of 201–16,740 bp with an N50 length of 902 bp
Annotation Method: NR, KEGG, GO, Swiss-Prot, Pfam 32.0, String 10.0
Data Url
Reference
Yuan Y D, Yu M Y, Jia Z H, et al. Analysis of Dendrobium huoshanense transcriptome unveils putative genes associated with active ingredients synthesis.[J]. Bmc Genomics, 2018, 19: 978.
