Chinese Herbal Plant Genome Database

Species: Pogostemon cablin

Accession Number

SRR8761881-SRR8761882, SRR8756845-SRR8756847, SRR8755475-SRR8755477

Sample

Sample Location: Shizhen Mountain, Guangzhou University of Traditional Chinese Medicine (23.03°N, 113.23°E)

Sample Part: leaves and stems

Sequencing

Sequencing platform: Illumina Hiseq 2500

Sequencing data: 9.7 Gb clean data

Assembly and Annotation

Assembly software: SMRTlink, CD-HIT,Cogent

Assembly result: 251,015 transcripts, the total length of these transcripts was 439,224,625 bp.

Annotation Method: Nr, Nt, Pfam, KEGG, KOG, Swiss-Prot, GO

Data Url

https://www.ncbi.nlm.nih.gov/sra?linkname=bioproject_sra_all&from_uid=528262 https://www.ncbi.nlm.nih.gov/sra?linkname=bioproject_sra_all&from_uid=511937

Reference

Chen Xiuzhen, Li Junren,Wang Xiaobing, et al. Full-length transcriptome sequencing and methyl jasmonate-induced expression profile analysis of genes related to patchoulol biosynthesis and regulation in Pogostemon cabli[J]. BMC Plant Biology 2019, 19(1): 266.

Reference url

https://bmcplantbiol.biomedcentral.com/articles/10.1186/s12870-019-1884-x