Species: Ruta chalepensis
Sample
Sample Location: grown for 3 months in lab, College of Science, King Saud University, Riyadh, Saudi Arabia
Sample Part: leaves, stems, roots
Sequencing
Sequencing platform: Illumina NovaSeq 6000
Sequencing data: 6 Gb of data per sample
Assembly and Annotation
Assembly software: Trinity, HISAT
Assembly result: 254,685 transcripts, 154,018 genes, with 42.60 % GC content, an average length of 1,183.54 bp, and N50 of 2,280 bp.
Annotation Method: SwissProt, UniRef90, Conserved Domains databases, GO
Reference
Abdel-Salam EM, Faisal M, Alatar AA, Qahtan AA, Alam P. Genome-wide transcriptome variation landscape in Ruta chalepensis organs revealed potential genes responsible for rutin biosynthesis. J Biotechnol. 2021 Jan 10;325:43-56.
Reference url