Species: Plumbago zeylanica
Accession Number
SRP171103
Sample
Sample Location: the botanical garden at Savitribai Phule Pune University, Pune, India
Sample Part: Leaves and roots of one year old
Sequencing
Sequencing platform: Illumina NextSeq 500
Sequencing data: 94,638,859 raw reads, 80,388,390 clean reads.
Assembly and Annotation
Assembly software: Trinity
Assembly result: 327,633 transcript, with an average length of 702 bp, N50 of 1,131 bp. CD-HIT-EST tool clustered assembly to 230,914 transcripts with average size of 608 bp and N50 of 832 bp.
Annotation Method: GO, NR
Data Url
Reference
Vasav A P, Pable A A, Barvkar V T. Differential transcriptome and metabolome analysis of Plumbago zeylanica L. reveal putative genes involved in plumbagin biosynthesis[J]. Fitoterapia, 2020, 147: 104761.
