Species: Aconitum carmichaelii
Accession Number
SRP190869
Sample
Sample Location: grown in natural conditions at Jiangyou Fuzi GAP cultivation base(Z175 and R184 varieties)
Sample Part: leaves
Sequencing
Sequencing platform: Illumina HiSeq 2500
Sequencing data: 334,875,774 raw reads, 330,460,082 clean reads
Assembly and Annotation
Assembly software: Trinity
Assembly result: 187 million transcripts from the six leaves transcriptomes of A. carmichaelii, with an N50 value of 1,309 bp, an average length of 853 bp, and a maximal length of 11,085 bp. And 175 million unigenes were obtained with an N50 value of 1,393 bp, an average length of 993 bp, and the same maximal length with transcripts.
Annotation Method: KEGG, Swiss-Prot, COG/KOG, Nr, Nt, GO, Pfam
Reference
Yang Y X, Hu P, Zhou X J, et al. Transcriptome analysis of Aconitum carmichaelii and exploration of the salsolinol biosynthetic pathway[J]. Fitoterapia, 2020, 140:104412.
Reference url