Description
Platycodon grandiflorus, a herbaceous perennial with bell-shaped flowers, belongs to the bellflower family, Campanulaceae. P. grandiflorus roots have been used as a popular food additive with therapeutic effects and also as a traditional medicine to treat respiratory diseases (bronchitis, asthma, tonsillitis, and pulmonary tuberculosis) and cold-related symptoms in East Asia for >2000 years
- SUMMARY
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Published journals
Horticulture Research
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Publish date
2020.07
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Sequence Method
Illumina HiSeq
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Assembly
RDA_PgrJ_v1
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Assembly Method
SOAPdenovo2 v. 2.04; Celera Assembler v. 8.1; GARM v. 0.7.5; CAP3 v. 02-10-2015
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Genome Size
680.178 Mb
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Genome Coverage
480.2x
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Scaffolds
4816
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Contigs
75346
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N50
58279
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GC%
36.3
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Bioproject
PRJNA526590
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GCA Number
GCA_004681165.1
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Data
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/681/165/GCA_004681165.1_RDA_PgrJ_v1/
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Reference url
Reference
Kim, J., Kang, S. H., Park, S. G., Yang, T. J., Lee, Y., Kim, O. T., ... & Lee, K. (2020). Whole-genome, transcriptome, and methylome analyses provide insights into the evolution of platycoside biosynthesis in Platycodon grandiflorus, a medicinal plant. Horticulture research, 7(1), 1-12.
- SUMMARY
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Sequence Method
Illumina HiSeq, PacBio
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Assembly Method
Nextdenovo2.0
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Genome Size
532 Mb
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Genome Coverage
146x
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Scaffolds
2981
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Contigs
2484
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N50
527,227