Description
Aquilaria sinensis is one of the important plant resources involved in the production of agarwood in China. The agarwood resin collected from wounded Aquilaria trees has been used in Asia for aromatic or medicinal purposes from ancient times.
- SUMMARY
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Published journals
Molecular Ecology Resources
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Publish date
2020.03
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Sequence Method
Illumina HiSeq
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Assembly
CUHK_Asin_1.0
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Assembly Method
HiRise v. May-2019
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Genome Size
783.887 Mb
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Genome Coverage
55.67x
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Scaffolds
14276
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Contigs
47303
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N50
60210
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GC%
36.9
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Bioproject
PRJNA534170
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GCA Number
GCA_011066525.1
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Data
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/066/525/GCA_011066525.1_CUHK_Asin_1.0/
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Reference url
https://www.biorxiv.org/content/10.1101/2020.03.03.972679v1.abstract
Reference
Nong, W., Law, S., Wong, A., Baril, T., Swale, T., Chu, L. M., Hayward, A., Lau, D., & Hui, J. (2020). Chromosomal-level reference genome of the incense tree Aquilaria sinensis. Molecular ecology resources, 20(4), 971–979.
- SUMMARY
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Published journals
GigaScience
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Publish date
2020.03
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Sequence Method
Oxford Nanopore, Illumina
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Assembly Method
wtdbg, Pilon version 1.22, BWA
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Genome Size
720.18 Mb
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Genome Coverage
150x
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Scaffolds
675
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Contigs
1862
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N50
1096099
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Bioproject
PRJNA556948
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Data
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Reference url
https://academic.oup.com/gigascience/article/9/3/giaa013/5771296?login=true
Reference
Ding, X., Mei, W., Lin, Q., Wang, H., Wang, J., Peng, S., Li, H., Zhu, J., Li, W., Wang, P., Chen, H., Dong, W., Guo, D., Cai, C., Huang, S., Cui, P., & Dai, H. (2020). Genome sequence of the agarwood tree Aquilaria sinensis (Lour.) Spreng: the first chromosome-level draft genome in the Thymelaeceae family. GigaScience, 9(3), giaa013.