Description
Yam is a collective name for tuber-bearing crops belonging to the monocotyledonous Dioscorea genus in the family Dioscoreaceae of the order Dioscoreales.This genus contains approximately 450 species which are primarily distributed in tropical and subtropical regions worldwide. D. rotundata is a medicinal and edible homologous plant.
- SUMMARY
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Published journals
BMC Biology
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Publish date
2017.09
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Sequence Method
Illumina HiSeq 2500
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Assembly
TDr96_F1_Pseudo_Chromosome_v1.0
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Assembly Method
Allpaths-LG v. r49856, SSPACE Premium v. 2.3
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Genome Size
456.675 Mb
-
Genome Coverage
100x
-
Scaffolds
21
-
Contigs
34429
-
N50
22084
-
GC%
31.5652
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Bioproject
PRJDB3383
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GCA Number
GCA_002240015.2
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Data
-
Reference url
https://bmcbiol.biomedcentral.com/articles/10.1186/s12915-017-0419-x
Reference
Tamiru, M., Natsume, S., Takagi, H., White, B., Yaegashi, H., Shimizu, M., ... & Urasaki, N. (2017). Genome sequencing of the staple food crop white Guinea yam enables the development of a molecular marker for sex determination. BMC biology, 15(1), 86.
- SUMMARY
-
Published journals
BMC Biology
-
Publish date
2017.09
-
Sequence Method
Illumina HiSeq 2500
-
Assembly
TDr96x99_v1.0.fasta
-
Assembly Method
Allpaths-LG v. r49856, SSPACE Premium v. 2.3
-
Genome Size
594.227 Mb
-
Genome Coverage
100x
-
Scaffolds
4723
-
Contigs
55363
-
N50
18853
-
GC%
37.8
-
Bioproject
PRJDB3383
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GCA Number
GCA_002260605.1
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Data
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/260/605/GCA_002260605.1_TDr96x99_v1.0.fasta/
-
Reference url
https://bmcbiol.biomedcentral.com/articles/10.1186/s12915-017-0419-x
Reference
Tamiru, M., Natsume, S., Takagi, H., White, B., Yaegashi, H., Shimizu, M., ... & Urasaki, N. (2017). Genome sequencing of the staple food crop white Guinea yam enables the development of a molecular marker for sex determination. BMC biology, 15(1), 86.
- SUMMARY
-
Published journals
BMC Biology
-
Publish date
2017.09
-
Sequence Method
Illumina MiSeq
-
Assembly
TDr97_00917_Female_DDN
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Assembly Method
DiscovarDeNovo v. r52488
-
Genome Size
730.21 Mb
-
Genome Coverage
22x
-
Scaffolds
615107
-
Contigs
615781
-
N50
3317
-
GC%
36
-
Bioproject
PRJDB3383
-
GCA Number
GCA_002260665.1
-
Data
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/260/665/GCA_002260665.1_TDr97_00917_Female_DDN/
-
Reference url
https://bmcbiol.biomedcentral.com/articles/10.1186/s12915-017-0419-x
Reference
Tamiru, M., Natsume, S., Takagi, H., White, B., Yaegashi, H., Shimizu, M., ... & Urasaki, N. (2017). Genome sequencing of the staple food crop white Guinea yam enables the development of a molecular marker for sex determination. BMC biology, 15(1), 86.
- SUMMARY
-
Published journals
BMC Biology
-
Publish date
2017.09
-
Sequence Method
Illumina MiSeq
-
Assembly
TDr97_00777_Male_DDN
-
Assembly Method
DiscovarDeNovo v. r52488
-
Genome Size
683.283 Mb
-
Genome Coverage
25x
-
Scaffolds
641416
-
Contigs
642113
-
N50
2673
-
GC%
35.2
-
Bioproject
PRJDB3383
-
GCA Number
GCA_002260645.1
-
Data
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/260/645/GCA_002260645.1_TDr97_00777_Male_DDN/
-
Reference url
https://bmcbiol.biomedcentral.com/articles/10.1186/s12915-017-0419-x
Reference
Tamiru, M., Natsume, S., Takagi, H., White, B., Yaegashi, H., Shimizu, M., ... & Urasaki, N. (2017). Genome sequencing of the staple food crop white Guinea yam enables the development of a molecular marker for sex determination. BMC biology, 15(1), 86.