Description
Papaver somniferum is a species of flowering plant in the family Papaveraceae. It has been both a friend and foe of human civilization. In use since Neolithic times, the sap, known as opium, contains various alkaloids, including morphine and codeine, with effects ranging from pain relief and cough suppression to euphoria, sleepiness, and addiction.
- SUMMARY
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Published journals
Science
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Publish date
2018.08
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Sequence Method
Illumina HiSeq, PacBio, 10X Genomics
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Assembly
ASM357369v1
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Assembly Method
DeNovoMAGIC v. 3.0; Falcon v. 3.1
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Genome Size
2715.53 Mb
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Genome Coverage
239.0x
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Scaffolds
34381
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Contigs
65344
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N50
1773300
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GC%
37.3014
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Bioproject
PRJNA435796
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GCA Number
GCA_003573695.1
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Data
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/573/695/GCF_003573695.1_ASM357369v1/
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Reference url
https://science.sciencemag.org/content/362/6412/343.abstract
Reference
Guo, L., Winzer, T., Yang, X., Li, Y., Ning, Z., He, Z., ... & Ye, K. (2018). The opium poppy genome and morphinan production. Science, 362(6412), 343-347.
- SUMMARY
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Published journals
Nature Communications
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Publish date
2020.11
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Sequence Method
Illumina
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Assembly
ASM1011999v1
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Assembly Method
Phase Genomics' Proximo Hi-C genome scaffolding platform v. 2019; Juicebox v. 1.9.1
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Genome Size
2637.75 Mb
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Genome Coverage
13x
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Scaffolds
11
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Contigs
9646
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N50
1838815
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GC%
37.328
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Bioproject
PRJNA508405
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GCA Number
GCA_010119995.1
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Data
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/010/119/995/GCA_010119995.1_ASM1011999v1/
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Reference url
Reference
Li, Q., Ramasamy, S., Singh, P., Hagel, J. M., Dunemann, S. M., Chen, X., Chen, R., Yu, L., Tucker, J. E., Facchini, P. J., & Yeaman, S. (2020). Gene clustering and copy number variation in alkaloid metabolic pathways of opium poppy. Nature communications, 11(1), 1190.